Powered by GENOMACHUB
TOPICS COVERED
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Introduction to clinical genomics of infectious diseases
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The experimental application of each of these in your field of study
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Identifying problems in the healthcare, industrial, and other life science research space
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The use of critical thinking and problem-solving tools to design a hypothesis in solving the identified problems
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
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Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Access and Download an unknown sample which you can use for practice on NCBI Blast tool.
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Please note that, the version of Geneious Software we are giving you works only for Windows operating system (OS)
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Please note that, the version of Geneious Software we are giving you works only for Windows Operating System (OS)
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Please note that, the version of Geneious Software we are giving you works only for Windows operating system (OS)
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Tutorials
Tasks
Materials and Method
In your research methodology, make sure to utilize the provided template and video tutorial as a structured framework to provide a brief but comprehensive description of the procedures used to collect your data from NCBI database emphasizing the data retrieval methods and quality control measures.
Results
Prepare Table 1 with the title 'Construction of General Sequence Properties.' Organize columns for accession numbers, raw data size, sources, geographical regions, sequencing platforms, genome types, layout, file types, etc., ensuring clarity and proper labeling.
NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
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Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
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Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
Resource
Subject 1
Data Acquisition and Preprocessing
Module 1
Collection of WGS (NGS) Genomic Data: Gather whole genome sequencing data of multi-drug resistant pathogenic bacteria strains from relevant sources and databases.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Genomics Insights into the Mechanisms of Bacteria's Pathogenicity
Module 1
Mobilome Profile Study: Investigating the mechanisms governing strain mobility and exploring its pivotal role in the development of infections.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Tasks: Research Project Write-up
Materials and Method
The detailed procedure for performing mobilome Profiling analysis is provided in Module 5 of the course materials and methods section, and it does not need to be described again.
Results
In the Mobilome Profile Study's Results section, gather data by filtering through the Bv-Brc platform, used for genome annotation. Subsequently, employ either Excel or Tableau to generate visualizations based on the filtered data, presenting the expression level of MGEs across strains or species
NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
Genomics Insights into the Mechanisms of Bacteria's Pathogenicity
Module 1
Plasmid/Prophages Prediction: In-depth examination of plasmid and prophage presence, unraveling their intricate roles and implications within our study.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Tasks: Research Project Write-up
Materials and Method
In your research methodology, make sure to utilize the provided template and video tutorial as a structured framework to describe how the Plasmid/Prophages Prediction analysis was conducted
Results
Based on the earlier analysis, generate Table 5 to summarize plasmid-related findings and Table 6 to present results concerning prophages. Ensure clear presentation with appropriate labels for clarity.
NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
Identification of Genetic Markers
Module 10
Variant Annotation: Annotate SNPs to identify variants with potential functional significance, such as drug resistance associated mutations etc.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Tasks: Research Project Write-up
Materials and Method
In your research methodology, make sure to utilize the provided template and video tutorial as a structured framework to describe how the Plasmid/Prophages Prediction analysis was conducted
Results
Based on the earlier analysis, generate Table 5 to summarize plasmid-related findings and Table 6 to present results concerning prophages. Ensure clear presentation with appropriate labels for clarity.
NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
Tutorials
Resource
Subject 1
Data Acquisition and Preprocessing
Module 2
Quality Control and Genome Assembly: Assess data quality, perform trimming, and filter out low-quality reads to ensure reliable results. Perform genome assembly and extract contigs
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
In your research methodology, make sure to utilize the provided template and video tutorial as a structured framework to provide a detailed description of the procedures used to perform quality control and genome assembly including the tools utilized during the process.
Results
Make a concise summary of the genome assembly process. In your report, focus on a clear write-up of the genome assembly process, with particular emphasis on key metrics such as Sample IDs, Total Reads, Classified Reads, Average Length, Assembly Size (in kb), and Genome Length (in bp). Also, create a well-organized Table 2 to present these metrics for easy reference and understanding by readers.NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Tutorials
Resource
Subject 1
Comprehensive Genome Analysis
Module 3
Functional Annotation: covering gene prediction, protein features, specialty features, chromosomal properties, etc. providing a deep understanding of how to assign biological functions to genetic sequences.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
Describe the procedures and methods used for the Functional Annotation process in the Materials and Methods section of your research project, ensure that the description is detailed and follows the provided formatting and template guidelines for clarity and consistency.
Results
Prepare Table 3, and make an informative and organized Results section that focuses on the write-up and presentation of Table 3, titled 'Construction of Chromosomal Genome Properties,' encompassing details such as CDS, Genes, RNA, Hypothetical Protein, Functional Protein, GO assignments, Pfam, CRISPR, and other relevant properties. NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Subject:
Resource
Subject 1
Comprehensive Genome Analysis
Module 4
Functional Genome Categorization: The use of the Rastk tool kit to perform comparative subsystem categorization of all genome strains.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
Incorporate the methods for Subsystem Functional Categorization using NMPD, SEED-based, prokaryotic genome annotation services into the annotation procedure from Module 3 "Functional Annotation", ensuring a seamless and concise description of the added steps.
Results
Generate Figure 1, a heatmap showcasing comparative Subsystem Functional Categorizations for all genomes, and provide a concise yet insightful write-up that interprets the differences and similarities revealed by the heatmap. NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Tutorials
Resource
Subject 1
Genomic Insights into Drug Resistance and Mechanisms of Action
Module 5
Resistome Profile Study: Understanding the mechanisms underlying antibiotic resistance and its relevance to the spread and evolution of multi-drug resistant pathogenic bacteria.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
In your research methodology, make sure to utilize the provided template and video tutorial as a structured framework to provide the procedure for detecting and quantifying resistome profiles through BLASTP and k-mer-based methods, utilizing specialty gene databases like ARDB, CARD, and PATRIC AMR-related curation.
Results
Prepare for the manual curation of the analysis results performed above by collating the relevant data into an Excel file, ensuring that the dataset is well-structured and organized for subsequent statistical analysis. Pay attention to accurate data entry and the inclusion of essential variables required for the analysis. NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template.
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Subject:
Genomic Insights into Drug Resistance and Mechanisms of Action
Resource
Module 5
Resistome Profile Study: Understanding the mechanisms underlying antibiotic resistance and its relevance to the spread and evolution of multi-drug resistant pathogenic bacteria.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
In the Materials and Methods section, describe the statistical analysis process, focusing on the use of Tableau, Excel, https://biit.cs.ut.ee/clustvis/ for heatmaps, Galaxy, and any other relevant tools or software.
Results
In Tableau Public, utilize the cleaned data to generate visualizations for Figure 2 (ARG heatmap), Figure 3 (Prevalence of AMR genes), Figure 4 (Percentage distribution of ARG resistance mechanisms), Figure 5a (Relative distribution of AMR genes in antibiotics class), Figure 5b (Relative distribution of AMR genes in resistance mechanisms), and create heatmaps for AMR genes and resistance mechanisms as Figure 6 and Figure 7. Ensure clear formatting for seamless integration into the research paper. NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
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Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
Subject:
Genomics Insights into the Mechanisms of Bacteria's Pathogenicity
Resource
Module 5
Resistome Profile Study: Understanding the mechanisms underlying antibiotic resistance and its relevance to the spread and evolution of multi-drug resistant pathogenic bacteria.
Materials
A PDF documents containing the presentation materials or step-by-step guidelines to help you replicate the content covered in the tutorial video accurately.
Research Write-up Template
A structured guide to outline your research methodology and results in a systematic and organized manner for your projects.
Tasks
Materials and Method
The detailed procedure for performing Virulome Profiling analysis is provided in Module 5 of the course materials and methods section, and it does not need to be described again.
Results
In the Results, perform statistical analysis by collecting virulence gene data in Excel, cleaning and pivoting data using Tableau, and create Figure 8 (Strain vs. Virulence Factors) and figure 9 (Strain vs. Virulence Genes) for visualization. and also make able 4 (Shared genes and functions
NOTE: Follow the format demonstrated in the video tutorial and as displayed in the provided template
-
Materials and Methods: Master crafting a detailed methodology section, covering tools, techniques, and data sources.
-
Results: Learn data analysis and presentation for clear and compelling findings, including effective figure and table creation.
-
Write-up Submission: Submit your draft for expert review, the initial step towards compiling your final research project at the end of the program.
At Omicboard, we provide a comprehensive support system for your learning journey. Explore our FAQ section for quick answers to common queries, engage with our vibrant community to connect with peers and experts, and take advantage of live member chats or WhatsApp to get instant support, quick replies, and real-time guidance from professionals—all designed to enhance your knowledge and skills.
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Access and Download an unknown sample which you can use for practice on NCBI Blast tool.
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Please note that, the version of Geneious Software we are giving you works only for Windows operating system (OS)
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Please note that, the version of Geneious Software we are giving you works only for Windows Operating System (OS)
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
TOPICS COVERED
-
Overview of genomics, bioinformatics, and their applications in various fields.
-
Understanding the central dogma of molecular biology.
-
Introduction to genomics technologies and data generation.
Tasks
A PDF documents containing the presentation materials and workflow to help you replicate the content covered in the tutorial video accurately.
Click the button below to get access to your own Activation Key for Geneious Software on your Laptop
Access in-depth video tutorials and practical tasks designed to guide you to transform your projects into publishable research. Track your progress in real-time, and elevate your research journey.